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| Wednesday October 14, 2015 Workshop day 1 @ Hotel Palace, Via Francesco Lombardi 13, Bari |
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| 08.30-09.00 | Registration and poster hang-up |
| 09.00-09.15 | Welcome and Introduction |
| 09.15-10.00 | Opening Lecture |
| Adventures in Cereal Genomics Paul Kersey, European Bioinformatics Institute, Hinxton, Cambridge, United Kingdom |
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| 10.00-11.00 | Scientific Session 1 |
| Taxonomic and functional metagenomic analysis of anodic communities in two pilot-scale microbial fuel cells treating different industrial wastewaters Larisa Kiseleva, Sofya K. Garushyants, Hongwu Ma, David J. W. Simpson, Viatcheslav Fedorovich, Michael F. Cohen, Igor Goryanin |
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| MetaShot: a complete workflow for the characterization of human microbiome from shotgun metagenomic data Bruno Fosso, Monica Santamaria, Domenica Lovero, Giacomo Corrado, Enrico Vizza, N Passaro, Marco Crescenzi and Graziano Pesole |
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| 11.00-12.00 | Poster session with coffee break service |
| 12.00-12.30 | Scientific Session 2 |
| The LAILAPS plant science search engine: Explore plant genome databases Jinbo Chen, Christian Colmsee, Uwe Scholz and Matthias Lange |
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| 12.30-13.15 | Keynote Lecture |
| Building Cell Maps Emek Demir, Sloan Kettering Institute, New York, USA |
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| 13.15-14.15 | Lunch break |
| 14.15-15.45 | Scientific Session 3 |
| OpenLabNotes – An Eletronic Laboratory Notebook Extension for OpenLabFramework Markus List, Michael Franz, Qihua Tan, Jan Mollenhauer and Jan Baumbach |
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| Phenomics validation of the Escherichia coli underground metabolic reconstruction Claudio Angione |
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| RetroMine, or how to provide in-depth retrospective studies from Medline in a glance: The hepcidin use-case Bertrand Ameline de Cadeville, Olivier Loréal and Fouzia Moussouni-Marzolf |
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| 15.45-16.30 | Coffee break |
| 16.30-18.00 | Scientific Session 4 |
| Managing and Documenting Legacy Scientific Workflows Ruben Acuna, Jacques Chomilier and Zoe Lacroix |
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| MSA-PAD: Novel DNA Multiple Sequence Alignment Guided by PFAM Conserved Domains Bachir Balech, Saverio Vicario, Giacinto Donvito, Alfonso Monaco, Pasquale Notarangelo and Graziano Pesole |
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| Bioinformatic and Genomic technologies to uncover inter-varietal structural variation in grape genome Maria Francesca Cardone, Pietro D’Addabbo, Can Alkan, Carlo Bergamini, Claudia Rita Catacchio, Fabio Anaclerio, Giorgia Chiatante, Annamaria Marra, Rocco Perniola, Giuliana Giannuzzi, Mario Ventura and Donato Antonacci |
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| Improving the Prediction of miRNA:mRNA Interactions by Exploiting Co-Clustering Methods Gianvito Pio, Michelangelo Ceci, Domenica D’Elia and Donato Malerba |
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| Clustering, Querying, and Updating Biological Sequences with CLAST Vicente Molieri, Lina Karam and Zoe Lacroix |
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| 18.00 | Day Closure |
| Thursday October 15, 2015 Workshop day 2 @ Hotel Palace, Via Francesco Lombardi 13, Bari |
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| 08.30-09.15 | Registration and poster hang-up |
| 09.15-10.00 | Keynote Lecture |
| Bioinformatics Cloud Services for Life Sciences Christophe Blanchet, French Institute of Bioinformatics, Gif-sur-Yvette, France |
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| 10.00-11.00 | Scientific Session 5 |
| Integrating Gene Regulatory Networks to identify cancer-specific genes Valeria Bo, Dimple Chudasama, Emmanouil Karteris and Allan Tucker |
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| Prediction and simulation of multi-target therapies for triple negative breast cancer through a network-based data integration approach Francesca Vitali, Laurie D. Cohen, Angela Amato, Alberto Zambelli and Riccardo Bellazzi |
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| 11.00-12.00 | Poster session with coffee break service |
| 12.00-13.00 | Scientific Session 6 |
| Comparison between heuristic and statistical analysis on protein structural properties Eugenio Del Prete, Serena Dotolo, Anna Marabotti and Angelo Facchiano |
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| Machine Learning approach to discriminate Saccharomyces cerevisiae yeast cells using sophisticated image features Mohamed Tleis and Fons Verbeek |
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| 13.00-14.00 | Lunch break |
| 14.00-14.45 | Keynote Lecture |
| de.NBI – The German Network for Bioinformatics Infrastructure Alexander Goesmann, Justus Liebig University Giessen, Germany |
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| 14.45-15.15 | Scientific Session 7 |
| WISE: Workflow Instrumentation for Structure Extraction and Semantic Mapping Ruben Acuna and Zoe Lacroix |
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| 15.15-15.45 | Special guest lecture |
| Elixir-ITA: the state of the art Graziano Pesole, University of Bari and CNR/IBBE, Bari, Italy |
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| 15.45-16.30 | Coffee break |
| 16.30-18.15 | Day closure and start of Guided Tour of Bari |
| 20.00-23.00 | Social Dinner |
| Friday October 16, 2015 Workshop day 3 @ Hotel Palace, Via Francesco Lombardi 13, Bari |
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| 09.15-10.00 | Keynote Lecture |
| Characterising miRNA promoters and miRNA targets Artemis Hatzigeorgiou, DIANA-Lab, Hellenic Pasteur Institute / Department of Computer & Communication Engineering, University of Thessaly, Greece |
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| 10.00-11.00 | Scientific Session 8 |
| In silico prediction of lncRNA function Umberto Perron, Paolo Provero and Ivan Molineris |
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| Identification of functional interaction between Transcription Factors and their targets: a computational approach focused on lncRNA Marika Catapano, Elena Grassi, Ivan Molineris and Paolo Provero |
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| 11.00-12.00 | Poster session with coffee break service |
| 12.00-12.45 | Keynote Lecture |
| Implementation of the European life-science infrastructure for biological information Rafael Jimenez, ELIXIR Chief Technical Officer – ELIXIR, Hinxton, Cambridge, United Kingdom |
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| 12.45-13.00 | Announces, closure and farewell Announcement of Integrative Bioinformatics 2016 Ralf Hofestädt, University of Bielefeld Announcement of NETTAB 2016 Allegra Via, ELIXIR-ITA |
