{"id":575,"date":"2014-09-26T14:15:40","date_gmt":"2014-09-26T14:15:40","guid":{"rendered":"http:\/\/www.igst.it\/nettab\/2014\/?page_id=575"},"modified":"2019-11-14T17:06:32","modified_gmt":"2019-11-14T16:06:32","slug":"scientific-programme","status":"publish","type":"page","link":"http:\/\/www.igst.it\/nettab\/2019\/programme\/scientific-programme\/","title":{"rendered":"Scientific programme"},"content":{"rendered":"
<\/a><\/div>\n
\n

Final Scientific Programme<\/b><\/p>\n

For the programme of tutorials, see the Tutorials page<\/a>.<\/p>\n

Presentations in PDF are being linked from here, given the agreement of presenters. For available presentations, the icon is displayed.<\/p>\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n
\n

Tuesday November 12, 2019<\/strong><\/h3>\n<\/td>\n<\/tr>\n

09.00<\/td>\nRegistration and poster hang-up<\/td>\n<\/tr>\n
09.30<\/strong><\/td>\nOpening Session<\/strong><\/p>\n

Welcome and Introduction<\/b>
\nWelcome messages by hosting Institutes
\n NETTAB Workshops and BBCC Meetings<\/b><\/a>
\nPaolo Romano<\/u>, IRCCS Ospedale Policlinico San Martino, Genoa, Italy
\nAngelo Facchiano<\/u>, ISA\/CNR, Avellino, Italy
\nIntroduction to the special topic “Computational Proteomics”<\/b>
\nLennart Martens<\/u>, VIB, University of Gent, Belgium<\/td>\n<\/tr>\n

09.45<\/strong><\/td>\nOpening Session<\/strong><\/p>\n

Opening Lecture<\/font> – Chair: Paolo Romano<\/b>
\nExploring the coding and non-coding miRNA targetome<\/b><\/a>
\nArtemis Hatzigeorgiou<\/u>, DIANA-Lab, Hellenic Pasteur Institute \/ Department of Electrical and Computer Engineering, University of Thessaly, Greece<\/td>\n<\/tr>\n

10.30<\/strong><\/td>\nScientific Session 1 – Chair: Paolo Romano and Artemis Hatzigeorgiou<\/strong><\/p>\n

Array-based genotyping discloses signatures of artificial selection and provides insights into the history of durum wheat breeding in Italy<\/b>
\nNunzio D’Agostino<\/u>, University of Naples ‘Federico II’, Italy<\/p>\n

Flash poster presentations<\/b><\/p>\n

\n
    \n
  • VarGenius2 finds SNVs and CNVs in WES, WGS and RNASeq and paves the way to implementation of downstream algorithms for cohort data traversing<\/b>
    \nFrancesco Musacchia<\/u>, Telethon Institute for Genetics and Medicine, Pozzuoli (Naples), Italy<\/li>\n
  • Analysis of NGS data for the identification of mutations involved in the pathogenesis of rare tumors<\/b>
    \nDomenico Memoli<\/u>, University of Salerno, Baronissi, Italy<\/li>\n<\/ul>\n<\/div>\n<\/td>\n<\/tr>\n
11.00<\/td>\nPoster session with coffee break service<\/td>\n<\/tr>\n
11.45<\/strong><\/td>\nScientific Session 2 – Chair: Paolo Romano and Angelo Facchiano<\/strong><\/p>\n

Development of data fusion techniques for the integration of multi-domain genomic data<\/b>
\nMax Pfeffer<\/u>, Max Planck Institute for Mathematics in the Sciences, Leipzig, Germany
\n
\nIdentification of genomic variants responsible for pregnancy loss: a pilot study<\/b>
\nSilvia Buonaiuto<\/u>, Institute of Genetics and Biophysics ‘A. Buzzati-Traverso’, CNR, Naples, Italy
\n<\/td>\n<\/tr>\n

12.15<\/strong><\/td>\nKeynote Lecture 1 – Chair: Paolo Romano and Angelo Facchiano<\/strong><\/p>\n

To boldly go: uncovering protein post-translational modifications at the proteome scale<\/b><\/a>
\nLennart Martens<\/u>, VIB, University of Gent, Belgium<\/td>\n<\/tr>\n

13.00<\/td>\nLunch break<\/td>\n<\/tr>\n
14.30<\/strong><\/td>\nKeynote Lecture 2 – Chair: Lennart Martens<\/strong><\/p>\n

Cross-linking for all: XL-MS for protein-protein, protein-DNA, and protein-RNA interactions<\/b><\/a>
\nOliver Kohlbacher<\/u>, University of Tuebingen, Germany<\/td>\n<\/tr>\n

15.15<\/strong><\/td>\nScientific Session 3 – Chair: Lennart Martens and Oliver Kohlbacher<\/strong>
\n
\nThe articulated structure of KCTD proteins: an integrated structural biology approach<\/b>
\nLuigi Vitagliano<\/u>, Institute of Biostructures and Bioimaging (IBB), CNR, Naples, Italy
\n
\nMultiagent Simulation of Long-Distance Electrodynamic Interactions among Biomolecules<\/b>
\nStefano Maestri<\/u>, University of Camerino, Italy
\n
\nPredicting disorder and educated guess of mutations modulating the stability of coiled-coils<\/b>
\nYasaman Karami<\/u>, Sorbonne Universite, UPMC University Paris 06, France
\n<\/p>\n

Flash poster presentations<\/b><\/p>\n

\n
    \n
  • HaDeX: an R package and web-server for analysis of data from hydrogen-deuterium exchange mass spectrometry experiments<\/b>
    \nDominik Cysewski<\/u>, Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Warsaw, Poland<\/li>\n
  • Weighted protein network analysis (WPCNA) decrypt Rab8b and Rab31 as key affiliates of exosomal secretion; extending their role in Parkinson\u2019s disease pathology seeding and spreading<\/b>
    \nRohit Kumar<\/u>, German Center for Neurodegenerative Diseases (DZNE), Munich, Germany<\/li>\n<\/ul>\n<\/div>\n<\/td>\n<\/tr>\n
16.30<\/strong><\/td>\nSocial activity and Dinner<\/strong><\/td>\n<\/tr>\n
 <\/td>\n<\/tr>\n
\n

Wednesday November 13, 2019<\/strong><\/h3>\n<\/td>\n<\/tr>\n

09.00<\/td>\nRegistration and poster hang-up<\/td>\n<\/tr>\n
09.30<\/strong><\/td>\nKeynote Lecture 3 – Chair: Juan Antonio Vizca\u00edno<\/strong><\/p>\n

Bioinformatics tools and analyses in Proteomics<\/b><\/a>
\nMartin Eisenacher<\/u>, Medizinisches Proteom-Center (MPC), Ruhr-Universit\u00e4t Bochum, Germany<\/td>\n<\/tr>\n

10.15<\/strong><\/td>\nScientific Session 4 – Chair: Juan Antonio Vizca\u00edno and Martin Eisenacher<\/strong><\/p>\n

neXtProt tools for the identification and validation of human proteins by mass spectrometry<\/b>
\nLydie Lane<\/u>, SIB Swiss Institute of Bioinformatics, Switzerland
\n
\nGeenaR: a web tool for MALDI-ToF mass spectra management<\/b>
\nEugenio Del Prete<\/u>, Istituto per le Applicazioni del Calcolo ‘M. Picone’ – CNR, Italy
\n<\/td>\n<\/tr>\n

10.45<\/strong><\/td>\nPoster session with coffee break service<\/strong><\/td>\n<\/tr>\n
11.30<\/strong><\/td>\nScientific Session 5 – Chair: Juan Antonio Vizca\u00edno and Martin Eisenacher<\/strong><\/p>\n

Structural determination of Streptococcus M1 protein interaction with human IgGs using targeted cross-linking mass spectrometry<\/b>
\nHamed Khakzad<\/u>, University of Zurich, Switzerland
\n
\nCombinational approach to detect membrane proteins<\/b>
\nMunira Alballa<\/u>, Concordia University, Montreal, Canada
\n<\/td>\n<\/tr>\n

12.00<\/strong><\/td>\nPanel discussion
\nChair: Oliver Kohlbacher, Lennart Martens and Juan Antonio Vizca\u00edno<\/strong><\/p>\n

Community efforts for Computational Proteomics<\/b>
\nKeynote speakers’ introduction to the theme, then open discussion<\/td>\n<\/tr>\n

13.00<\/td>\nLunch break<\/td>\n<\/tr>\n
14.00<\/strong><\/td>\nKeynote Lecture 4 – Chair: Claudia Angelini<\/strong><\/p>\n

Integrative and single cell genomics approaches to dissect cell fate decisions and genetic disorders<\/b><\/a>
\nDavide Cacchiarelli<\/u>, Telethon Institute of Genetics and Medicine – TIGEM, Naples, Italy<\/td>\n<\/tr>\n

14.45<\/strong><\/td>\nScientific Session 6 – Chair: Claudia Angelini and Davide Cacchiarelli<\/strong><\/p>\n

ARDESIA: a web app for Automatic Report of DEconvolution tools by SIngle cell Annotation<\/b>
\nAndrea Grilli<\/u>, University of Milan, Italy
\n
\nReliable simulation of count data for single cell RNA sequencing<\/b>
\nGiacomo Baruzzo<\/u>, Department of Information Engineering, University of Padua, Italy<\/p>\n

The impact of gene ontology evolution on gene ontology GO-term information content<\/b>
\nMarianna Milano<\/u>, University of Catanzaro ‘Magna Graecia’, Italy
\n
\nAutomation and optimization of bioinformatics NGS pipelines on HPC architectures for the reuse of a large datasets.<\/b>
\nTiziana Castrignan\u00f2<\/u>, CINECA, Rome, Italy
\n<\/td>\n<\/tr>\n

15.45<\/strong><\/td>\nClosing Session – Chair: Paolo Romano and Angelo Facchiano<\/strong><\/p>\n

Closing Lecture<\/font><\/b>
\n\u201cBig data\u201d approaches in proteomics: Re-use of public proteomics datasets<\/b><\/a>
\nJuan Antonio Vizca\u00edno<\/u>, European Bioinformatics Institute, United Kingdom<\/td>\n<\/tr>\n

16.30<\/strong><\/td>\nAnnouncements and closure<\/b><\/p>\n

NETTAB 2020<\/b><\/a>
\nPaolo Romano<\/u>, IRCCS Ospedale Policlinico San Martino, Genoa, Italy
\nMeeting outcomes and BBCC 2020<\/b>
\nAngelo Facchiano<\/u>, ISA\/CNR, Avellino, Italy<\/td>\n<\/tr>\n

16.45<\/td>\nWorkshop Closure<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<\/div>\n","protected":false},"excerpt":{"rendered":"

Final Scientific Programme For the programme of tutorials, see the Tutorials page. Presentations in PDF are being linked from here, given the agreement of presenters. For available presentations, the icon is displayed. Tuesday November 12, 2019 09.00 Registration and poster hang-up 09.30 Opening Session Welcome and Introduction Welcome messages by hosting Institutes NETTAB Workshops and […]<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":4001,"menu_order":0,"comment_status":"closed","ping_status":"open","template":"","meta":{"footnotes":""},"class_list":["post-575","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"http:\/\/www.igst.it\/nettab\/2019\/wp-json\/wp\/v2\/pages\/575","targetHints":{"allow":["GET"]}}],"collection":[{"href":"http:\/\/www.igst.it\/nettab\/2019\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"http:\/\/www.igst.it\/nettab\/2019\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"http:\/\/www.igst.it\/nettab\/2019\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"http:\/\/www.igst.it\/nettab\/2019\/wp-json\/wp\/v2\/comments?post=575"}],"version-history":[{"count":19,"href":"http:\/\/www.igst.it\/nettab\/2019\/wp-json\/wp\/v2\/pages\/575\/revisions"}],"predecessor-version":[{"id":4611,"href":"http:\/\/www.igst.it\/nettab\/2019\/wp-json\/wp\/v2\/pages\/575\/revisions\/4611"}],"up":[{"embeddable":true,"href":"http:\/\/www.igst.it\/nettab\/2019\/wp-json\/wp\/v2\/pages\/4001"}],"wp:attachment":[{"href":"http:\/\/www.igst.it\/nettab\/2019\/wp-json\/wp\/v2\/media?parent=575"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}