Scientific programme

Final Scientific Programme

For the programme of tutorials, see the Tutorials page.

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Tuesday November 12, 2019
09.00	Registration and poster hang-up
09.30	Opening Session Welcome and Introduction Welcome messages by hosting Institutes NETTAB Workshops and BBCC Meetings Paolo Romano, IRCCS Ospedale Policlinico San Martino, Genoa, Italy Angelo Facchiano, ISA/CNR, Avellino, Italy Introduction to the special topic “Computational Proteomics” Lennart Martens, VIB, University of Gent, Belgium
09.45	Opening Session Opening Lecture – Chair: Paolo Romano Exploring the coding and non-coding miRNA targetome Artemis Hatzigeorgiou, DIANA-Lab, Hellenic Pasteur Institute / Department of Electrical and Computer Engineering, University of Thessaly, Greece
10.30	Scientific Session 1 – Chair: Paolo Romano and Artemis Hatzigeorgiou Array-based genotyping discloses signatures of artificial selection and provides insights into the history of durum wheat breeding in Italy Nunzio D’Agostino, University of Naples ‘Federico II’, Italy Flash poster presentations VarGenius2 finds SNVs and CNVs in WES, WGS and RNASeq and paves the way to implementation of downstream algorithms for cohort data traversing Francesco Musacchia, Telethon Institute for Genetics and Medicine, Pozzuoli (Naples), Italy Analysis of NGS data for the identification of mutations involved in the pathogenesis of rare tumors Domenico Memoli, University of Salerno, Baronissi, Italy
11.00	Poster session with coffee break service
11.45	Scientific Session 2 – Chair: Paolo Romano and Angelo Facchiano Development of data fusion techniques for the integration of multi-domain genomic data Max Pfeffer, Max Planck Institute for Mathematics in the Sciences, Leipzig, Germany Identification of genomic variants responsible for pregnancy loss: a pilot study Silvia Buonaiuto, Institute of Genetics and Biophysics ‘A. Buzzati-Traverso’, CNR, Naples, Italy
12.15	Keynote Lecture 1 – Chair: Paolo Romano and Angelo Facchiano To boldly go: uncovering protein post-translational modifications at the proteome scale Lennart Martens, VIB, University of Gent, Belgium
13.00	Lunch break
14.30	Keynote Lecture 2 – Chair: Lennart Martens Cross-linking for all: XL-MS for protein-protein, protein-DNA, and protein-RNA interactions Oliver Kohlbacher, University of Tuebingen, Germany
15.15	Scientific Session 3 – Chair: Lennart Martens and Oliver Kohlbacher The articulated structure of KCTD proteins: an integrated structural biology approach Luigi Vitagliano, Institute of Biostructures and Bioimaging (IBB), CNR, Naples, Italy Multiagent Simulation of Long-Distance Electrodynamic Interactions among Biomolecules Stefano Maestri, University of Camerino, Italy Predicting disorder and educated guess of mutations modulating the stability of coiled-coils Yasaman Karami, Sorbonne Universite, UPMC University Paris 06, France Flash poster presentations HaDeX: an R package and web-server for analysis of data from hydrogen-deuterium exchange mass spectrometry experiments Dominik Cysewski, Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Warsaw, Poland Weighted protein network analysis (WPCNA) decrypt Rab8b and Rab31 as key affiliates of exosomal secretion; extending their role in Parkinson’s disease pathology seeding and spreading Rohit Kumar, German Center for Neurodegenerative Diseases (DZNE), Munich, Germany
16.30	Social activity and Dinner

Wednesday November 13, 2019
09.00	Registration and poster hang-up
09.30	Keynote Lecture 3 – Chair: Juan Antonio Vizcaíno Bioinformatics tools and analyses in Proteomics Martin Eisenacher, Medizinisches Proteom-Center (MPC), Ruhr-Universität Bochum, Germany
10.15	Scientific Session 4 – Chair: Juan Antonio Vizcaíno and Martin Eisenacher neXtProt tools for the identification and validation of human proteins by mass spectrometry Lydie Lane, SIB Swiss Institute of Bioinformatics, Switzerland GeenaR: a web tool for MALDI-ToF mass spectra management Eugenio Del Prete, Istituto per le Applicazioni del Calcolo ‘M. Picone’ – CNR, Italy
10.45	Poster session with coffee break service
11.30	Scientific Session 5 – Chair: Juan Antonio Vizcaíno and Martin Eisenacher Structural determination of Streptococcus M1 protein interaction with human IgGs using targeted cross-linking mass spectrometry Hamed Khakzad, University of Zurich, Switzerland Combinational approach to detect membrane proteins Munira Alballa, Concordia University, Montreal, Canada
12.00	Panel discussion Chair: Oliver Kohlbacher, Lennart Martens and Juan Antonio Vizcaíno Community efforts for Computational Proteomics Keynote speakers’ introduction to the theme, then open discussion
13.00	Lunch break
14.00	Keynote Lecture 4 – Chair: Claudia Angelini Integrative and single cell genomics approaches to dissect cell fate decisions and genetic disorders Davide Cacchiarelli, Telethon Institute of Genetics and Medicine – TIGEM, Naples, Italy
14.45	Scientific Session 6 – Chair: Claudia Angelini and Davide Cacchiarelli ARDESIA: a web app for Automatic Report of DEconvolution tools by SIngle cell Annotation Andrea Grilli, University of Milan, Italy Reliable simulation of count data for single cell RNA sequencing Giacomo Baruzzo, Department of Information Engineering, University of Padua, Italy The impact of gene ontology evolution on gene ontology GO-term information content Marianna Milano, University of Catanzaro ‘Magna Graecia’, Italy Automation and optimization of bioinformatics NGS pipelines on HPC architectures for the reuse of a large datasets. Tiziana Castrignanò, CINECA, Rome, Italy
15.45	Closing Session – Chair: Paolo Romano and Angelo Facchiano Closing Lecture “Big data” approaches in proteomics: Re-use of public proteomics datasets Juan Antonio Vizcaíno, European Bioinformatics Institute, United Kingdom
16.30	Announcements and closure NETTAB 2020 Paolo Romano, IRCCS Ospedale Policlinico San Martino, Genoa, Italy Meeting outcomes and BBCC 2020 Angelo Facchiano, ISA/CNR, Avellino, Italy
16.45	Workshop Closure

NETTAB/BBCC 2019 Joint Meeting

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Scientific programme

Tuesday November 12, 2019

Wednesday November 13, 2019

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