{"id":575,"date":"2014-09-26T14:15:40","date_gmt":"2014-09-26T14:15:40","guid":{"rendered":"http:\/\/www.igst.it\/nettab\/2014\/?page_id=575"},"modified":"2017-12-14T16:29:15","modified_gmt":"2017-12-14T15:29:15","slug":"scientific-programme","status":"publish","type":"page","link":"http:\/\/www.igst.it\/nettab\/2017\/programme\/scientific-programme\/","title":{"rendered":"Detailed programme"},"content":{"rendered":"
<\/a><\/b><\/div>\n
\nA PDF version of the programme is also available for download and print: NETTAB 2017 Scientific Programme (v2.5)<\/a>.<\/p>\n
This is the programme of the workshop only. In the Agenda at a glance<\/a> page you will soon find times of all events. For detailed information on tutorials, see the tutorials page<\/a>.
\nPresentations in PDF will be linked from here, given the agreement of presenters. For available presentations, the icon will be displayed.
\n \n<\/div>\n<\/div>\n
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Monday October 16, 2017
\nWorkshop day 1 @ ICAR CNR Site, Via Ugo La Malfa, 153, Palermo<\/span><\/td>\n<\/tr>\n
13.30-14.30<\/td>\nRegistration and poster hang-up<\/td>\n<\/tr>\n
14.30-14.45<\/td>\nWelcome and Introduction
\nGiuseppe De Pietro<\/u>, HPC & Networking Institute, National Research Council, Palermo, Italy
Luciano Milanesi<\/u>, BITS Bioinformatics Italian Society, Italy
Paolo Romano<\/u>, Ospedale Policlinico San Martino, Italy <\/a>
A. Maurizio Urso<\/u>, HPC & Networking Institute, National Research Council, Palermo, Italy <\/a>
\n<\/span><\/td>\n<\/tr>\n
14.45-15.30<\/td>\nKeynote Lecture<\/b>
\n\n<\/td>\n<\/tr>\n
<\/td>\nInteroperability of clinical, pathological and omics data to execute personalised medicine<\/b> (see abstract<\/a>)
\nAnita Grigoriadis<\/u>, King’s College London, United Kingdom<\/td>\n<\/tr>\n
15.30-16.05<\/td>\nScientific Session 1<\/b>
\n\n<\/td>\n<\/tr>\n
<\/td>\nEpistasis analysis reveals associations between gene variants and bipolar disorder<\/b> (see preprint<\/a>) <\/a>
\nCarlo Maj<\/u>, Elena Milanesi, Massimo Gennarelli, Luciano Milanesi and Ivan Merelli<\/td>\n<\/tr>\n
Identification of Mutational Signatures Active in Individual Tumors<\/b> (see preprint<\/a>) <\/a>
\nSandra Krüger and Rosario M Piro<\/u><\/td>\n<\/tr>\n
16.05-16.50<\/td>\nKeynote Lecture<\/b><\/td>\n<\/tr>\n
<\/td>\nDisease comorbidities and network approaches<\/b> (see abstract<\/a>)
\nAlfonso Valencia<\/u>, Barcelona Supercomputing Center, Spain\n<\/td>\n<\/tr>\n
16.50-17.20<\/td>\nCoffee break<\/td>\n<\/tr>\n
17.20-17.35<\/td>\nFlash poster presentations 1<\/b>
\n\n<\/td>\n<\/tr>\n
<\/td>\nP1 Visualizing Mutation Occurrence using Big Data<\/b> (see preprint<\/a>) <\/a>
\nS. Albert<\/u>
\nP2 A Gene Set Enrichment Analysis of multiomic celiac disease data<\/b> (see preprint<\/a>)
\nE. Del Prete<\/u>, A. Facchiano and P. Li\u00f2
\nP3 Network diffusion on multiple-layers: current approaches and integrative analysis of Rheumatoid Arthritis data<\/b> (see preprint<\/a>) <\/a>
\nN. Di Nanni<\/u>, M. Gnocchi, M. Moscatelli, L. Milanesi and E. Mosca
\nP4 Evolutionary relationships of Microbial Transglutaminases<\/b> (see preprint<\/a>) <\/a>
\nD. Giordano<\/u> and A. Facchiano
\nP5 Exploiting transcriptomic data in genome scale metabolic networks: new insights into obesity<\/b> (see preprint<\/a>) <\/a>
\nI. Granata<\/u>, M. Sangiovanni, E. Troiano and M. Guarracino
\nP6 Implementing a multilayer framework for pathway data integration, analysis and visualization<\/b> (see preprint<\/a>) <\/a>
\nZ. Hammoud<\/u> and F. Kramer<\/td>\n<\/tr>\n
17.35-18.05<\/td>\nGuest Lecture<\/b>
\n\n<\/td>\n<\/tr>\n
<\/td>\nGetting Beyond Proof of Principle for Big Data Technologies in Bioinformatics: MapReduce Algorithmic, Programming and Architectural issues<\/b> (see abstract<\/a>)
\nRaffaele Giancarlo<\/u>, University of Palermo, Italy<\/td>\n<\/tr>\n
18.05-18.45<\/td>\nScientific Session 2<\/b>
\n\n<\/td>\n<\/tr>\n
<\/td>\nMelanoma expression analysis with Big Data technologies<\/b> (see preprint<\/a>) <\/a>
\nAlicia Fernandez-Rovira, Rocio Lavado, Miguel Ángel Berciano Guerrero, Ismael Navas-Delgado<\/u> and José F. Aldana Montes\n<\/td>\n<\/tr>\n
GenHap: A novel computational method based on genetic algorithms for haplotype assembly<\/b> (see preprint<\/a>)
\nAndrea Tangherloni<\/u>, Simone Spolaor, Leonardo Rundo, Marco S Nobile, Ivan Merelli, Paolo Cazzaniga, Daniela Besozzi, Giancarlo Mauri and Pietro Liò\n<\/td>\n<\/tr>\n
18.45<\/td>\nDay closure<\/td>\n<\/tr>\n<\/table>\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n
Tuesday October 17, 2017
\nWorkshop day 2 @ ICAR CNR Site, Via Ugo La Malfa, 153, Palermo<\/span><\/td>\n<\/tr>\n
08.30-09.00<\/td>\nRegistration and poster hang-up<\/td>\n<\/tr>\n
09.00-09.55<\/td>\nScientific Session 3<\/b>
\n\n<\/td>\n<\/tr>\n
<\/td>\nParameters tuning boosts hyperSMURF predictions of rare deleterious non-coding genetic variants<\/b> (see preprint<\/a>) <\/a>
\nAlessandro Petrini, Max Schubach, Matteo Re, Marco Frasca, Marco Mesiti, Giuliano Grossi, Tiziana Castrignanò, Peter N Robinson and Giorgio Valentini<\/u><\/td>\n<\/tr>\n
Greedy motif-based approach to parsing large and diverge coiled-coil proteins into domains<\/b> (see preprint<\/a>)
\nHamed Khakzad<\/u>, Johan Malmström and Lars Malmström<\/td>\n<\/tr>\n
From trash to treasure: detecting unexpected contamination in unmapped NGS data<\/b> (see preprint<\/a>) <\/a>
\nIlaria Granata, Mara Sangiovanni<\/u>, Amarinder Singh Thind and Mario Rosario Guarracino <\/td>\n<\/tr>\n
09.55-10.40<\/td>\nKeynote Lecture<\/b>
\n\n<\/td>\n<\/tr>\n
<\/td>\nMaking genomics Come true: How can we achieve real acceleration of genomics into medicine?<\/b> (see abstract<\/a>)
\nWinston Hide<\/u>, University of Sheffield, United Kingdom<\/td>\n<\/tr>\n
10.40-10.55<\/td>\nFlash poster presentations 2: from P8 to P14<\/b>
\n\n<\/td>\n<\/tr>\n
<\/td>\nP8 Querying and analyzing biological data with BioGraph<\/b> (see preprint<\/a>)
\nA. Messina<\/u>, A. Fiannaca, L. La Paglia, M. La Rosa and A. M. Urso
\nP10 ISMARA: Completely automated inference of gene regulatory networks from high-throughput data<\/b> (see preprint<\/a>) <\/a>
\nM. Pachkov<\/u>, P. Balwierz, P. Arnold, A. Gruber, M. Zavolan and E. van Nimwegen
\nP11 An Algebraic Representation for Tree Alignment of RNA Pseudoknotted Structures<\/b> (see preprint<\/a>)
\nM. Quadrini<\/u>, L. Tesei and E. Merelli
\nP12 Procedure to integrate i2b2 and REDCap: a case study at ICSM<\/b> (see preprint<\/a>) <\/a>
\nV. Tibollo<\/u>, M. Bucalo, D. Vella, M. Stuppia, N. Barbarini and R. Bellazzi
\nP13 Stability Analysis of MTopGO for Module Identification in PPI Networks<\/b> (see preprint<\/a>)
\nD. Vella<\/u>, A. Tucker and R. Bellazzi
\nP14 A Quality Management System for scientific research activities and its related management software<\/b> (see preprint<\/a>)
\nL. Caruana<\/u>, A. Pensato, L. Riccobono, G. L. Liguori, A. Lanati, A. Kisslinger, M. Di Carlo and A. Bongiovanni<\/td>\n<\/tr>\n
10.55-12.15<\/td>\nPoster session with coffee break service<\/td>\n<\/tr>\n
12.15-12.45<\/td>\nGuest Lecture<\/b>
\n\n<\/td>\n<\/tr>\n
<\/td>\nOpen Data is Essential for Personalized Medicine<\/b> (see abstract<\/a>) <\/a>
\nFrancis Ouellette<\/u>, Génome Québec, Canada<\/td>\n<\/tr>\n
12.45-13.15<\/td>\nGuest Lecture<\/b>
\n\n<\/td>\n<\/tr>\n
<\/td>\nWalking pathways in cancer<\/b> (see abstract<\/a>)
\nAlexander Kel<\/u>, GeneXplain, Germany<\/td>\n<\/tr>\n
13.15-14.30<\/td>\nLunch break<\/td>\n<\/tr>\n
14.30-15.05<\/td>\nScientific Session 4<\/b>
\n\n<\/td>\n<\/tr>\n
<\/td>\nMTopGO: a tool for module identification in PPI Networks<\/b> (see preprint<\/a>)
\nDanila Vella<\/u>, Simone Marini, Francesca Vitali and Riccardo Bellazzi<\/td>\n<\/tr>\n
GenotypeAnalytics: an RESTful Platform to mine multiple associations between SNPs and drug response in case-control studies<\/b> (see preprint<\/a>)
\nGiuseppe Agapito, Pietro Hiram Guzzi and Mario Cannataro<\/u><\/td>\n<\/tr>\n
15.05-15.35<\/td>\nGuest Lecture<\/b>
\n\n<\/td>\n<\/tr>\n
<\/td>\nBig data and cognitive computing in healthcare: weathering the perfect storm<\/b> (see abstract<\/a>)
\nMatthias Reumann<\/u>, IBM Research – Zurich, Switzerland<\/td>\n<\/tr>\n
15.35-16.30<\/td>\nPanel discussion<\/b><\/td>\n<\/tr>\n
<\/td>\nTitle to be defined<\/b>
\nGiovanni Vizzini, UPMC Italy, Palermo and invited speakers. Comments and questions may follow.<\/font><\/td>\n<\/tr>\n
16.30<\/td>\nDay closure<\/td>\n<\/tr>\n
16.30-20.30<\/td>\nSocial activity: Guided tour to Monreale and Cefalù<\/td>\n<\/tr>\n
20.30-23.00<\/td>\nSocial Dinner in Cefalù<\/td>\n<\/tr>\n<\/table>\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n
Wednesday October 18, 2017
\nWorkshop day 3 @ ICAR CNR Site, Via Ugo La Malfa, 153, Palermo<\/span><\/td>\n<\/tr>\n
08.30-09.00<\/td>\nRegistration and poster hang-up<\/td>\n<\/tr>\n
09.00-09.30<\/td>\nGuest Lecture<\/b>
\n\n<\/td>\n<\/tr>\n
<\/td>\nELIXIR-IIB \u2013 the Italian Infrastructure for Bioinformatics: a growing support to national and international research in life sciences<\/b> (see abstract<\/a>)
\nLuana Licata<\/u>, ELIXIR-IIB, Italy<\/td>\n<\/tr>\n
09.30-10.15<\/td>\nKeynote Lecture<\/b>
\n\n<\/td>\n<\/tr>\n
<\/td>\nAtlas of Cancer Signaling Network and NaviCell: Systems Biology resources for studying cancer biology<\/b> (see abstract<\/a>) <\/a>
\nInna Kuperstein<\/u>, Institut Curie, Paris, France<\/td>\n<\/tr>\n
10.15-11.05<\/td>\nScientific Session 5<\/b>
\n\n<\/td>\n<\/tr>\n
<\/td>\nPersonalised models for human \u2013 gut microbiota interaction<\/b> (see preprint<\/a>) <\/a>
\nDavid Gilbert<\/u>, Monika Heiner and Leila Ghanbar\n<\/td>\n<\/tr>\n
A Dynamic Bayesian Network model for simulation of disease progression in Amyotrophic Lateral Sclerosis patients<\/b> (see preprint<\/a>) <\/a>
\nAlessandro Zandonà<\/u>, Matilde Francescon, Maya Bronfeld, Andrea Calvo, Adriano Chi\u00f2 and Barbara Di Camillo<\/td>\n<\/tr>\n
Multi-resolution network modelling of T-cells for precisions medicine of multiple sclerosis<\/b> (see preprint<\/a>) <\/a>
\nMika Gustafsson<\/u>\n<\/td>\n<\/tr>\n
11.05-12.15<\/td>\nPoster session with coffee break service<\/td>\n<\/tr>\n
12.15-12.50<\/td>\nScientific Session 6<\/b>
\n\n<\/td>\n<\/tr>\n
<\/td>\nPGxO: A very lite ontology to reconcile pharmacogenomic knowledge units<\/b> (see preprint<\/a>) <\/a>
\nPierre Monnin<\/u>, Cl\u00e9ment Jonquet, Jo\u00ebl Legrand, Amedeo Napoli and Adrien Coulet\n<\/td>\n<\/tr>\n
Interoperability of RehabRobo-Onto<\/b> (see preprint<\/a>) <\/a>
\nZeynep Dogmus, Volkan Patoglu and Esra Erdem<\/u>\n<\/td>\n<\/tr>\n
12.50-13.00<\/td>\nAnnouncement<\/b>\n<\/td>\n<\/tr>\n
<\/td>\nFirst announcement of NETTAB 2018<\/b> <\/a>
\nPaolo Romano<\/u>, Ospedale Policlinico San Martino, Italy\n<\/td>\n<\/tr>\n
13.00<\/td>\nWorkshop Closure and Farewell<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<\/div>\n","protected":false},"excerpt":{"rendered":"

A PDF version of the programme is also available for download and print: NETTAB 2017 Scientific Programme (v2.5). This is the programme of the workshop only. In the Agenda at a glance page you will soon find times of all events. For detailed information on tutorials, see the tutorials page. Presentations in PDF will be […]<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":7,"menu_order":0,"comment_status":"closed","ping_status":"open","template":"","meta":{"footnotes":""},"class_list":["post-575","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"http:\/\/www.igst.it\/nettab\/2017\/wp-json\/wp\/v2\/pages\/575","targetHints":{"allow":["GET"]}}],"collection":[{"href":"http:\/\/www.igst.it\/nettab\/2017\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"http:\/\/www.igst.it\/nettab\/2017\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"http:\/\/www.igst.it\/nettab\/2017\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"http:\/\/www.igst.it\/nettab\/2017\/wp-json\/wp\/v2\/comments?post=575"}],"version-history":[{"count":94,"href":"http:\/\/www.igst.it\/nettab\/2017\/wp-json\/wp\/v2\/pages\/575\/revisions"}],"predecessor-version":[{"id":3415,"href":"http:\/\/www.igst.it\/nettab\/2017\/wp-json\/wp\/v2\/pages\/575\/revisions\/3415"}],"up":[{"embeddable":true,"href":"http:\/\/www.igst.it\/nettab\/2017\/wp-json\/wp\/v2\/pages\/7"}],"wp:attachment":[{"href":"http:\/\/www.igst.it\/nettab\/2017\/wp-json\/wp\/v2\/media?parent=575"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}