{"id":533,"date":"2014-09-16T14:53:44","date_gmt":"2014-09-16T14:53:44","guid":{"rendered":"http:\/\/www.igst.it\/nettab\/2014\/?page_id=533"},"modified":"2016-12-15T09:22:11","modified_gmt":"2016-12-15T08:22:11","slug":"posters","status":"publish","type":"page","link":"http:\/\/www.igst.it\/nettab\/2016\/programme\/posters\/","title":{"rendered":"Posters and Software Demos"},"content":{"rendered":"<div align=\"right\"><b><a href=\"javascript:window.print()\"><img decoding=\"async\" src=\"\/nettab\/2015\/files\/2014\/12\/printButton.png\" border=\"0\" title=\"Click to print this page\"><\/a><\/b><\/div>\n<div align=\"justify\">\nSlides ae being collected and will be linked from here, previous agreement by the presenters, in PDF. See the <img decoding=\"async\" src=\"\/nettab\/2016\/files\/2016\/10\/pdf_icon.png\" width=\"16\"> icon.\n<\/div>\n<p><strong>Posters<\/strong><\/p>\n<p>The following posters will be in exposition in the main room for the whole duration of the workshop.<\/p>\n<div align=\"justify\" style=\"font-size:80%;\">\n<ul>\n<li><strong><font color=\"green\">P19<\/font> ELIXIR-IIB: a growing support to national and international research in life sciences<\/strong><br \/>\nAllegra Via, Federico Zambelli, Davide Carnevali, Tiziana Castrignan\u00f2, Andrea Cattani, Giovanni Chillemi, Gianmauro Cuccuru, Gianluca Della Vedova, Giacinto Donvito, Angelo Facchiano, Marco Fondi, Fulvio Galeazzi, Luana Licata, Anna Marabotti, Luciano Milanesi, Ernesto Picardi, Giuseppe Profiti, Sabrina Tomassini, Silvio Tosatto and Graziano Pesole<\/li>\n<li><strong><font color=\"green\">P32<\/font> Modern research requires the use of standards: the CHARME project and its aims<\/strong> <a href=\"\/nettab\/2016\/files\/2016\/11\/NETTAB2016_DElia_P32.pdf\" target=\"_blank\"><img decoding=\"async\" src=\"http:\/\/www.igst.it\/nettab\/2016\/files\/2016\/10\/pdf_icon.png\" width=16\"\"><\/a><br \/>\nDomenica D&#8217;Elia, Babette Regierer, Teresa K. Attwood, Erik Bongcam-Rudloff and Susanne Holmann<\/li>\n<\/ul>\n<\/div>\n<p>The following posters will be presented in the poster session held on Tuesday October 25, 2016, from 11.00 to 12.00.<\/p>\n<div align=\"justify\" style=\"font-size:80%;\">\n<ul>\n<li><strong><font color=\"green\">P3<\/font> An assessment of reporting quality of data analysis in metabolomics and a recommended tool for encouraging reporting guideline uptake<\/strong><br \/>\nElizabeth Considine, Greigoire Thomas, Louise Kenny and Ali Khashan<\/li>\n<li><strong><font color=\"green\">P5<\/font> Integrating and analyzing big next generation sequencing data of cancer<\/strong> <a href=\"\/nettab\/2016\/files\/2016\/11\/NETTAB2016_Weitschek_P5.pdf\" target=\"_blank\"><img decoding=\"async\" src=\"http:\/\/www.igst.it\/nettab\/2016\/files\/2016\/10\/pdf_icon.png\" width=16\"\"><\/a><br \/>\nEmanuel Weitschek, Fabio Cumbo, Eleonora Cappelli, Giovanni Felici and Paola Bertolazzi<\/li>\n<li><strong><font color=\"green\">P9<\/font> Good Laboratory Practices and L.I.M.S. system: the Challenge for a Next Generation Sequencing and Bioinformatic Research Laboratory<\/strong><br \/>\nMarinella Marzano, Caterina Manzari, Daniela Filannino, Rossella Pizzi, Anna Maria D&#8217;Erchia, Claudia Lionetti, Ernesto Picardi, Giuseppe Sgaramella, Graziano Pesole, Antonella Lanati and Francesca De Leo<\/li>\n<li><strong><font color=\"green\">P11<\/font> Exploring differential reporting for aberrant expression of gene fusions in glioma<\/strong><br \/>\nAlexey Stupnikov, Frank Emmert-Streib, David Gonzalez de Castro, Manuel Salto-Tellez and Darragh McArt<\/li>\n<li><strong><font color=\"green\">P13<\/font> Using the Nextflow framework for reproducible in-silico omics<\/strong><br \/>\nPaolo Di Tommaso, Maria Chatzou, Evan Floden and Cedric Notredame<\/li>\n<li><strong><font color=\"green\">P15<\/font> A benchmark for evaluation of phylogeny reconstruction programs<\/strong> <a href=\"\/nettab\/2016\/files\/2016\/11\/NETTAB2016_Spirin_P15.pdf\" target=\"_blank\"><img decoding=\"async\" src=\"http:\/\/www.igst.it\/nettab\/2016\/files\/2016\/10\/pdf_icon.png\" width=16\"\"><\/a><br \/>\nSergei Spirin<\/li>\n<li><strong><font color=\"green\">P17<\/font> A robust and reproducible method to validate survival analyses across datasets<\/strong><br \/>\nDominic Pearce and Andrew Sims<\/li>\n<li><strong><font color=\"green\">P20<\/font> Sustainability and robustness of mined biological knowledge: solutions using network-based pathway analysis<\/strong> <a href=\"\/nettab\/2016\/files\/2016\/11\/NETTAB2016_Alexeyenko_P20.pdf\" target=\"_blank\"><img decoding=\"async\" src=\"http:\/\/www.igst.it\/nettab\/2016\/files\/2016\/10\/pdf_icon.png\" width=16\"\"><\/a><br \/>\nAndrey Alexeyenko<\/li>\n<li><strong><font color=\"green\">P21<\/font> Designing the MIRRI Information System<\/strong> <a href=\"\/nettab\/2016\/files\/2016\/11\/NETTAB2016_Romano_P21.pdf\" target=\"_blank\"><img decoding=\"async\" src=\"http:\/\/www.igst.it\/nettab\/2016\/files\/2016\/10\/pdf_icon.png\" width=16\"\"><\/a><br \/>\nPaolo Romano, David Smith, Boyke Bunk, Alexander Vasilenko and Frank Oliver Gl\u00f6ckner<\/li>\n<li><strong><font color=\"green\">P23<\/font> Suitable reporting for the reproducible research: an added value in the analysis of proteomics data<\/strong> <a href=\"\/nettab\/2016\/files\/2016\/11\/NETTAB2016_DelPrete_P23.pdf\" target=\"_blank\"><img decoding=\"async\" src=\"http:\/\/www.igst.it\/nettab\/2016\/files\/2016\/10\/pdf_icon.png\" width=16\"\"><\/a><br \/>\nEugenio Del Prete, Angelo Facchiano, Claudia Angelini, Aldo Profumo and Paolo Romano<\/li>\n<li><strong><font color=\"green\">P25<\/font> The qPMO network:  quality management tools to improve research efficiency, reproducibility, data management and dissemination<\/strong> <a href=\"\/nettab\/2016\/files\/2016\/12\/NETTAB2016_Kisslinger_P25.pdf\" target=\"_blank\"><img decoding=\"async\" src=\"\/nettab\/2016\/files\/2016\/10\/pdf_icon.png\" width=16\"\"><\/a><br \/>\nAnnamaria Kisslinger, Giovanna Lucia Liguori, Gianni Colotti, Anna Maria Cirafici, Marta Di Carlo, Filomena Anna Digilio, Giuseppina Lacerra, Antonella Lanati, Anna Mascia and Antonella Bongiovanni<\/li>\n<li><strong><font color=\"green\">P27<\/font> QCumber: A Pipeline for Reproducible Automated batch-QC<\/strong> <a href=\"\/nettab\/2016\/files\/2016\/11\/NETTAB2016_Dabrowski_P27.pdf\" target=\"_blank\"><img decoding=\"async\" src=\"http:\/\/www.igst.it\/nettab\/2016\/files\/2016\/10\/pdf_icon.png\" width=16\"\"><\/a><br \/>\nVivi Lieu, Piotr Wojtek Dabrowski and Bernhard Renard<\/li>\n<li><strong><font color=\"green\">P29<\/font> Toward an Effective Management for Collecting, Preserving and Sharing Bioinformatics Training Material<\/strong><br \/>\nVictoria Dominguez Del Angel, Jean-Fran\u00e7ois Gibrat and Dominique Batista<\/li>\n<li><strong><font color=\"green\">P31<\/font> Cloud-based automated deployment of applications and infrastructures to provide turnkey appliances for reusable bioinformatic applications<\/strong> <a href=\"\/nettab\/2016\/files\/2016\/11\/NETTAB2016_Perrin_P31.pdf\" target=\"_blank\"><img decoding=\"async\" src=\"http:\/\/www.igst.it\/nettab\/2016\/files\/2016\/10\/pdf_icon.png\" width=16\"\"><\/a><br \/>\nSandrine Perrin, Jonathan Lorenzo, Bryan Brancotte, Christophe Blanchet and Jean-Fran\u00e7ois Gibrat<\/li>\n<\/ul>\n<\/div>\n<p>The following posters will be presented in the poster session held on Wednesday October 26, 2016, from 11.20 to 11.20.<\/p>\n<div align=\"justify\" style=\"font-size:80%;\">\n<ul>\n<li><strong><font color=\"green\">P2<\/font> Correlated mutations distinguish misfolded and properly folded proteins<\/strong> <a href=\"\/nettab\/2016\/files\/2016\/11\/NETTAB2016_Wozniak_P2.pdf\" target=\"_blank\"><img decoding=\"async\" src=\"http:\/\/www.igst.it\/nettab\/2016\/files\/2016\/10\/pdf_icon.png\" width=16\"\"><\/a><br \/>\nPawel P. Wo&zacute;niak, Malgorzata Kotulska and Gert Vriend<\/li>\n<li><strong><font color=\"green\">P4<\/font> RNA Structures Description Standards<\/strong> <a href=\"\/nettab\/2016\/files\/2016\/12\/NETTAB2016_Smietanski_P4.pdf\" target=\"_blank\"><img decoding=\"async\" src=\"http:\/\/www.igst.it\/nettab\/2016\/files\/2016\/10\/pdf_icon.png\" width=16\"\"><\/a><br \/>\nJacek \u015amieta\u0144ski<\/li>\n<li><strong><font color=\"green\">P6<\/font> Modelling and Simulation of BioSystems inspired by Electronic Design Automation<\/strong><br \/>\nRosario Distefano, Nickolas Goncharenko, Rosalba Giugno, Franco Fummi, Gary D. Bader and Nicola Bombieri<\/li>\n<li><strong><font color=\"green\">P7<\/font> Multi-type clustering for the identification of lncRNA-disease relationships<\/strong> <a href=\"\/nettab\/2016\/files\/2016\/11\/NETTAB2016_Pio_P7.pdf\" target=\"_blank\"><img decoding=\"async\" src=\"http:\/\/www.igst.it\/nettab\/2016\/files\/2016\/10\/pdf_icon.png\" width=16\"\"><\/a><br \/>\nGianvito Pio, Francesco Serafino, Emanuele Barracchia, Domenica D&#8217;Elia and Michelangelo Ceci<\/li>\n<li><strong><font color=\"green\">P8<\/font> Parallel Prediction of Protein Binding Sites<\/strong><br \/>\nMaria Mirto and Giovanni Aloisio<\/li>\n<li><strong><font color=\"green\">P10<\/font> PyRosetta energy terms as indicators for protein mirror models<\/strong><br \/>\nMonika Kurczynska, Bogumil Konopka and Malgorzata Kotulska<\/li>\n<li><strong><font color=\"green\">P12<\/font> A deep learning approach for ncRNA sequences classification<\/strong> <a href=\"\/nettab\/2016\/files\/2016\/11\/NETTAB2016_Fiannaca_P12.pdf\" target=\"_blank\"><img decoding=\"async\" src=\"http:\/\/www.igst.it\/nettab\/2016\/files\/2016\/10\/pdf_icon.png\" width=16\"\"><\/a><br \/>\nAntonino Fiannaca, Massimo La Rosa, Laura La Paglia, Riccardo Rizzo and Alfonso Urso<\/li>\n<li><strong><font color=\"green\">P14<\/font> Improving metabolite annotation through a new generation of plugin tools for genome-scale modelling<\/strong> <a href=\"\/nettab\/2016\/files\/2016\/11\/NETTAB2016_Lappa_P14.pdf\" target=\"_blank\"><img decoding=\"async\" src=\"http:\/\/www.igst.it\/nettab\/2016\/files\/2016\/10\/pdf_icon.png\" width=16\"\"><\/a><br \/>\nDimitra Lappa and Jens B. Nielsen<\/li>\n<li><strong><font color=\"green\">P16<\/font> PISA-Tree: Standard Directory Tree as a Support for Reproducible Research<\/strong> <a href=\"\/nettab\/2016\/files\/2016\/11\/NETTAB2016_Blejec_P16.pdf\" target=\"_blank\"><img decoding=\"async\" src=\"\/nettab\/2016\/files\/2016\/10\/pdf_icon.png\" width=\"16\"><\/a><br \/>\nAndrej Blejec and Kristina Gruden<\/li>\n<li><strong><font color=\"green\">P18<\/font> Reproducible Research Results<\/strong> <a href=\"\/nettab\/2016\/files\/2016\/11\/NETTAB2016_Jarosz_P18.pdf\" target=\"_blank\"><img decoding=\"async\" src=\"http:\/\/www.igst.it\/nettab\/2016\/files\/2016\/10\/pdf_icon.png\" width=16\"\"><\/a><br \/>\nYohan Jarosz, Wei Gu and Christophe Trefois<\/li>\n<li><strong><font color=\"green\">P22<\/font> Extending the Microbiological Common Language (MCL) towards the needs of the Microbial Resource Research Infrastructure (MIRRI)<\/strong> <a href=\"\/nettab\/2016\/files\/2016\/11\/NETTAB2016_Romano_P22.pdf\" target=\"_blank\"><img decoding=\"async\" src=\"http:\/\/www.igst.it\/nettab\/2016\/files\/2016\/10\/pdf_icon.png\" width=16\"\"><\/a><br \/>\nPaolo Romano, Daniele Pierpaolo Colobraro and Peter Dawyndt<\/li>\n<li><strong><font color=\"green\">P24<\/font> Phenotypic data interoperability: minimum information and formatting<\/strong><br \/>\nHanna \u0106wiek-Kupczy\u0144ska, Thomas Altmann, Daniel Arend, Elizabeth Arnaud, Dijun Chen, Guillaume Cornut, Fabio Fiorani, Wojciech Frohmberg, Astrid Junker, Christian Klukas, Matthias Lange, Cezary Mazurek, Anahita Nafissi, Pascal Neveu, Jan van Oeveren, Cyril Pommier, Hendrik Poorter, Philippe Rocca-Serra, Susanna-Assunta Sansone, Uwe Scholz, Marco van Schriek, \u00dcmit Seren, Bj\u00f6rn Usadel, Stephan Weise, Paul Kersey and Pawe\u0142 Krajewski<\/li>\n<li><strong><font color=\"green\">P26<\/font> USMI Galaxy Demonstrator (UGD): a collection of tools to integrate microorganisms information<\/strong> <a href=\"\/nettab\/2016\/files\/2016\/11\/NETTAB2016_Colobraro_P26.pdf\" target=\"_blank\"><img decoding=\"async\" src=\"http:\/\/www.igst.it\/nettab\/2016\/files\/2016\/10\/pdf_icon.png\" width=16\"\"><\/a><br \/>\nDaniele Pierpaolo Colobraro and Paolo Romano<\/li>\n<li><strong><font color=\"green\">P28<\/font> A robust and extensible framework for tracking biodata provenance, analysis workflows and results<\/strong> <a href=\"\/nettab\/2016\/files\/2016\/11\/NETTAB2016_Cuccuru_P28.pdf\" target=\"_blank\"><img decoding=\"async\" src=\"http:\/\/www.igst.it\/nettab\/2016\/files\/2016\/10\/pdf_icon.png\" width=16\"\"><\/a><br \/>\nGianmauro Cuccuru, Rossano Atzeni, Luca Lianas, Ricardo Medda, Luca Pireddu, Paolo Uva, Ilenia Zara, Gianluigi Zanetti and Giorgio Fotia<\/li>\n<li><strong><font color=\"green\">P30<\/font> Cloud Computing Training at French ELIXIR node (French Institute of Bioinformatics)<\/strong> <a href=\"\/nettab\/2016\/files\/2016\/11\/NETTAB2016_Perrin_P30.pdf\" target=\"_blank\"><img decoding=\"async\" src=\"http:\/\/www.igst.it\/nettab\/2016\/files\/2016\/10\/pdf_icon.png\" width=16\"\"><\/a><br \/>\nSandrine Perrin, Jonathan Lorenzo, Victoria Dominguez Del Angel, Christophe Blanchet and Jean-Fran\u00e7ois Gibrat<\/li>\n<\/ul>\n<\/div>\n<p><strong>Software demonstrations<\/strong><\/p>\n<div align=\"justify\" style=\"font-size:80%;\">\nThe following software demonstrations will be held in the poster session on Tuesday October 25, 2016, from 11.00 to 12.00.<\/p>\n<ul>\n<li><strong><font color=\"red\">D1<\/font> Reproducible and Interoperable Workflows in Multicloud for Personalized Medicine: Putting the Pieces Together<\/strong><br \/>\nMohamed Abouelhoda<\/li>\n<li><strong><font color=\"red\">D3<\/font> A quick introduction to the Nextflow pipeline framework<\/strong> <a href=\"\/nettab\/2016\/files\/2016\/11\/NETTAB2016_diTommaso.pdf\" target=\"_blank\"><img decoding=\"async\" src=\"\/nettab\/2016\/files\/2016\/10\/pdf_icon.png\" width=\"16\"><\/a><br \/>\nPaolo Di Tommaso, Maria Chatzou, Evan Floden and Cedric Notredame<\/li>\n<\/ul>\n<p>The following software demonstrations will be held in the poster session on Wednesday October 26, 2016, from 10.20 to 11.20.<\/p>\n<ul>\n<li><strong><font color=\"red\">D2<\/font> openBIS ELN-LIMS: an open resource for academic laboratories<\/strong><br \/>\nCaterina Barillari, Juan M Fuentes-Serna, Thomas W\u00fcst and Bernd Rinn<\/li>\n<li><strong><font color=\"red\">D4<\/font> Training Workflows in TeSS<\/strong><br \/>\nNiall Beard, Aleksandra Nenadic, Finn Bacall, Milo Thurston, Susanna-Assunta Sansone, Carole Goble and Terri Attwood<\/li>\n<\/ul>\n<\/div>\n","protected":false},"excerpt":{"rendered":"<p>Slides ae being collected and will be linked from here, previous agreement by the presenters, in PDF. See the icon. Posters The following posters will be in exposition in the main room for the whole duration of the workshop. P19 ELIXIR-IIB: a growing support to national and international research in life sciences Allegra Via, Federico [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":7,"menu_order":5,"comment_status":"closed","ping_status":"open","template":"","meta":{"footnotes":""},"class_list":["post-533","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"http:\/\/www.igst.it\/nettab\/2016\/wp-json\/wp\/v2\/pages\/533","targetHints":{"allow":["GET"]}}],"collection":[{"href":"http:\/\/www.igst.it\/nettab\/2016\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"http:\/\/www.igst.it\/nettab\/2016\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"http:\/\/www.igst.it\/nettab\/2016\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"http:\/\/www.igst.it\/nettab\/2016\/wp-json\/wp\/v2\/comments?post=533"}],"version-history":[{"count":47,"href":"http:\/\/www.igst.it\/nettab\/2016\/wp-json\/wp\/v2\/pages\/533\/revisions"}],"predecessor-version":[{"id":2592,"href":"http:\/\/www.igst.it\/nettab\/2016\/wp-json\/wp\/v2\/pages\/533\/revisions\/2592"}],"up":[{"embeddable":true,"href":"http:\/\/www.igst.it\/nettab\/2016\/wp-json\/wp\/v2\/pages\/7"}],"wp:attachment":[{"href":"http:\/\/www.igst.it\/nettab\/2016\/wp-json\/wp\/v2\/media?parent=533"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}