{"id":2112,"date":"2016-07-26T16:23:36","date_gmt":"2016-07-26T14:23:36","guid":{"rendered":"http:\/\/www.igst.it\/nettab\/2016\/?page_id=2112"},"modified":"2016-09-26T11:38:53","modified_gmt":"2016-09-26T09:38:53","slug":"hackathon","status":"publish","type":"page","link":"http:\/\/www.igst.it\/nettab\/2016\/programme\/hackathon\/","title":{"rendered":"Hackathon"},"content":{"rendered":"<div align=\"right\"><b><a href=\"javascript:window.print()\"><img decoding=\"async\" src=\"\/nettab\/2015\/files\/2014\/12\/printButton.png\" border=\"0\" title=\"Click to print this page\"><\/a><\/b><\/div>\n<div align=\"center\"><strong>A one day bioinformatics hackathon organized by ELIXIR<\/strong><br \/>\nheld in occasion of the NETTAB 2016 Workshop<\/p>\n<p><strong>See details and register at <a target=\"_blank\" href=\"http:\/\/tinyurl.com\/registryhackathon10\">http:\/\/tinyurl.com\/registryhackathon10<\/a>.<\/strong><\/div>\n<div align=\"justify\">\n<strong>Date and time<\/strong><br \/>\nThe hackathon will be held on Monday October 24, 2016, from 10.00 AM to 7.00 PM.<\/p>\n<p><strong>Contents<\/strong><br \/>\nThe hackathon will include the following two main strands:<\/p>\n<ul>\n<li><a href=\"#biotools\">Biosoftware description using bio.tools and schema.org<\/a><\/li>\n<li><a href=\"#docker\">Deployment of bioinformatics tools and services through Docker<\/a><\/li>\n<\/ul>\n<p><strong><a name=\"biotools\">Biosoftware description using bio.tools and schema.org<\/a><\/strong><br \/>\nThis session will provide a forum for knowledge exchange, technical discussions and hacking on the ELIXIR Tools &#038; Data Services Registry (<a href=\"http:\/\/bio.tools\/\" target=\"_blank\">bio.tools<\/a>) and the bioschemas project (<a href=\"http:\/\/bioschemas.org\/\" target=\"_blank\">bioschemas.org<\/a>), with focus on extending schema.org for bioinformatics tools in a way that is compatible with bio.tools.<br \/>\nParticipants will self-organise on the day and can pursue any tasks or discussion of interest.<br \/>\nThe expected activities and outcomes include:<\/p>\n<ul>\n<li>Understand the aims of bio.tools &#038; bioschemas and see how you can contribute<\/li>\n<li>Review existing software description models in bio.tools and schema.org<\/li>\n<li>Map the bio.tools and schema.org models<\/li>\n<li>Come up with a bioschemas bioinformatics software specification and produce a candidate type for schema.org<\/li>\n<li>Trial mark-up of bio.tools tool cards (e.g. <a href=\"https:\/\/bio.tools\/tool\/CBS\/SignalP\/4.1\" target=\"_blank\">https:\/\/bio.tools\/tool\/CBS\/SignalP\/4.1<\/a>)<\/li>\n<li>Explore provision of such mark-up &#8211; for use on local sites &#8211; as a bio.tools service<\/li>\n<\/ul>\n<p><strong><a name=\"docker\">Deployment of bioinformatics tools and services through Docker<\/a><\/strong><br \/>\nThis strand will provide a forum for knowledge exchange, technical discussions and hacking along the following lines:<\/p>\n<ul>\n<li>Docker+Galaxy integration: deployment of bioinformatics tools and services in Galaxy through Docker, Galaxy development made easy<\/li>\n<li>Galaxy in Docker and Galaxy flavours: <a href=\"https:\/\/slides.com\/bgruening\/the-galaxy-docker-project\/live#\/\" target=\"_balnk\">https:\/\/slides.com\/bgruening\/the-galaxy-docker-project\/live#\/<\/a><\/li>\n<li>Docker-ization of ELIXIR-ITA services\/tools.<\/li>\n<li>Docker-iRODS integration (see <a href=\"https:\/\/github.com\/gmauro\/boxed-irods\" target=\"_blank\">https:\/\/github.com\/gmauro\/boxed-irods<\/a>)<\/li>\n<li>Docker-ization with layer-donning: RIP Dockerfiles, the easiest way to create efficient images without doing anything! <a href=\"https:\/\/slides.com\/bgruening\/docker-layer-donning\/live#\/\" target=\"_blank\">https:\/\/slides.com\/bgruening\/docker-layer-donning\/live#\/<\/a><\/li>\n<li>How to ensure compatibility between containers? Study case: integration of various NGS packages within a same docker image: sometimes not obvious to combine existing containers.<\/li>\n<li>Using Docker containers in a Cloud platform (<a href=\"http:\/\/www.recas-bari.it\/\" target=\"_blank\">INFN-Bari<\/a> and <a href=\"http:\/\/www.indigo-datacloud.eu\/\" target=\"_blank\">INDIGO-DataCloud<\/a> examples)<\/li>\n<li>Using Docker to develop a Galaxy \u201con demand\u201d platform through cloud technologies<\/li>\n<\/ul>\n<p><strong>Attendees<\/strong><br \/>\nAll welcome (technical &#038; non-technical people!)<br \/>\nRegister by adding your name in the following public document:<br \/>\n<a target=\"_blank\" href=\"http:\/\/tinyurl.com\/registryhackathon10\">http:\/\/tinyurl.com\/registryhackathon10<\/a>.<\/div>\n<\/div>\n","protected":false},"excerpt":{"rendered":"<p>A one day bioinformatics hackathon organized by ELIXIR held in occasion of the NETTAB 2016 Workshop See details and register at http:\/\/tinyurl.com\/registryhackathon10. Date and time The hackathon will be held on Monday October 24, 2016, from 10.00 AM to 7.00 PM. Contents The hackathon will include the following two main strands: Biosoftware description using bio.tools [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":7,"menu_order":3,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-2112","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"http:\/\/www.igst.it\/nettab\/2016\/wp-json\/wp\/v2\/pages\/2112","targetHints":{"allow":["GET"]}}],"collection":[{"href":"http:\/\/www.igst.it\/nettab\/2016\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"http:\/\/www.igst.it\/nettab\/2016\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"http:\/\/www.igst.it\/nettab\/2016\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"http:\/\/www.igst.it\/nettab\/2016\/wp-json\/wp\/v2\/comments?post=2112"}],"version-history":[{"count":15,"href":"http:\/\/www.igst.it\/nettab\/2016\/wp-json\/wp\/v2\/pages\/2112\/revisions"}],"predecessor-version":[{"id":2354,"href":"http:\/\/www.igst.it\/nettab\/2016\/wp-json\/wp\/v2\/pages\/2112\/revisions\/2354"}],"up":[{"embeddable":true,"href":"http:\/\/www.igst.it\/nettab\/2016\/wp-json\/wp\/v2\/pages\/7"}],"wp:attachment":[{"href":"http:\/\/www.igst.it\/nettab\/2016\/wp-json\/wp\/v2\/media?parent=2112"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}