{"id":575,"date":"2014-09-26T14:15:40","date_gmt":"2014-09-26T14:15:40","guid":{"rendered":"http:\/\/www.igst.it\/nettab\/2014\/?page_id=575"},"modified":"2017-02-21T10:06:00","modified_gmt":"2017-02-21T10:06:00","slug":"scientific-programme","status":"publish","type":"page","link":"http:\/\/www.igst.it\/nettab\/2015\/programme\/scientific-programme\/","title":{"rendered":"Detailed programme"},"content":{"rendered":"
<\/a><\/b><\/div>\n
\nSlides are being collected and will be linked from here, previous agreement by the presenters, in PDF. See the icon.<\/p>\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n
Wednesday October 14, 2015<\/font>
Workshop day 1 @ Hotel Palace, Via Francesco Lombardi 13, Bari<\/font><\/td>\n<\/tr>\n
08.30-09.00<\/td>\nRegistration and poster hang-up<\/td>\n<\/tr>\n
09.00-09.15<\/td>\nWelcome and Introduction<\/td>\n<\/tr>\n
09.15-10.00<\/td>\nOpening Lecture<\/b><\/td>\n<\/tr>\n
 <\/td>\nAdventures in Cereal Genomics<\/b> <\/a>
Paul Kersey<\/u>, European Bioinformatics Institute, Hinxton, Cambridge, United Kingdom<\/td>\n<\/tr>\n
10.00-11.00<\/td>\nScientific Session 1<\/b><\/td>\n<\/tr>\n
 <\/td>\nTaxonomic and functional metagenomic analysis of anodic communities in two pilot-scale microbial fuel cells treating different industrial wastewaters<\/b>
Larisa Kiseleva, Sofya K. Garushyants, Hongwu Ma, David J. W. Simpson, Viatcheslav Fedorovich, Michael F. Cohen, Igor Goryanin<\/u><\/td>\n<\/tr>\n
MetaShot: a complete workflow for the characterization of human microbiome from shotgun metagenomic data<\/b> <\/a>
Bruno Fosso<\/u>, Monica Santamaria, Domenica Lovero, Giacomo Corrado, Enrico Vizza, N Passaro, Marco Crescenzi and Graziano Pesole<\/td>\n<\/tr>\n
11.00-12.00<\/td>\nPoster session with coffee break service<\/td>\n<\/tr>\n
12.00-12.30<\/td>\nScientific Session 2<\/b><\/td>\n<\/tr>\n
 <\/td>\nThe LAILAPS plant science search engine: Explore plant genome databases<\/b> <\/a>
Jinbo Chen<\/u>, Christian Colmsee, Uwe Scholz and Matthias Lange<\/td>\n<\/tr>\n
12.30-13.15<\/td>\nKeynote Lecture<\/b><\/td>\n<\/tr>\n
 <\/td>\nBuilding Cell Maps<\/b>
Emek Demir<\/u>, Sloan Kettering Institute, New York, USA<\/td>\n<\/tr>\n
13.15-14.15<\/td>\nLunch break<\/td>\n<\/tr>\n
14.15-15.45<\/td>\nScientific Session 3<\/b><\/td>\n<\/tr>\n
 <\/td>\nOpenLabNotes – An Eletronic Laboratory Notebook Extension for OpenLabFramework<\/b> <\/a>
Markus List<\/u>, Michael Franz, Qihua Tan, Jan Mollenhauer and Jan Baumbach<\/td>\n<\/tr>\n
Phenomics validation of the Escherichia coli underground metabolic reconstruction<\/b> <\/a>
Claudio Angione<\/u><\/td>\n<\/tr>\n
RetroMine, or how to provide in-depth retrospective studies from Medline in a glance: The hepcidin use-case<\/b> <\/a>
Bertrand Ameline de Cadeville, Olivier Lor\u00e9al and Fouzia Moussouni-Marzolf<\/u><\/td>\n<\/tr>\n
15.45-16.30<\/td>\nCoffee break<\/td>\n<\/tr>\n
16.30-18.00<\/td>\nScientific Session 4<\/b><\/td>\n<\/tr>\n
 <\/td>\nManaging and Documenting Legacy Scientific Workflows<\/b>
Ruben Acuna, Jacques Chomilier and Zoe Lacroix<\/u><\/td>\n<\/tr>\n
MSA-PAD: Novel DNA Multiple Sequence Alignment Guided by PFAM Conserved Domains<\/b> <\/a>
Bachir Balech<\/u>, Saverio Vicario, Giacinto Donvito, Alfonso Monaco, Pasquale Notarangelo and Graziano Pesole<\/td>\n<\/tr>\n
Bioinformatic and Genomic technologies to uncover inter-varietal structural variation in grape genome<\/b>
Maria Francesca Cardone<\/u>, Pietro D’Addabbo, Can Alkan, Carlo Bergamini, Claudia Rita Catacchio, Fabio Anaclerio, Giorgia Chiatante, Annamaria Marra, Rocco Perniola, Giuliana Giannuzzi, Mario Ventura and Donato Antonacci<\/td>\n<\/tr>\n
Improving the Prediction of miRNA:mRNA Interactions by Exploiting Co-Clustering Methods<\/b> <\/a>
Gianvito Pio<\/u>, Michelangelo Ceci, Domenica D’Elia and Donato Malerba<\/td>\n<\/tr>\n
Clustering, Querying, and Updating Biological Sequences with CLAST<\/b>
Vicente Molieri, Lina Karam and Zoe Lacroix<\/u><\/td>\n<\/tr>\n
18.00<\/td>\nDay Closure<\/td>\n<\/tr>\n<\/table>\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n
Thursday October 15, 2015<\/font>
Workshop day 2 @ Hotel Palace, Via Francesco Lombardi 13, Bari<\/font><\/td>\n<\/tr>\n
08.30-09.15<\/td>\nRegistration and poster hang-up<\/td>\n<\/tr>\n
09.15-10.00<\/td>\nKeynote Lecture<\/b><\/td>\n<\/tr>\n
 <\/td>\nBioinformatics Cloud Services for Life Sciences<\/b> <\/a>
Christophe Blanchet<\/u>, French Institute of Bioinformatics, Gif-sur-Yvette, France<\/td>\n<\/tr>\n
10.00-11.00<\/td>\nScientific Session 5<\/b><\/td>\n<\/tr>\n
 <\/td>\nIntegrating Gene Regulatory Networks to identify cancer-specific genes<\/b> <\/a>
Valeria Bo<\/u>, Dimple Chudasama, Emmanouil Karteris and Allan Tucker<\/td>\n<\/tr>\n
Prediction and simulation of multi-target therapies for triple negative breast cancer through a network-based data integration approach<\/b> <\/a>
Francesca Vitali<\/u>, Laurie D. Cohen, Angela Amato, Alberto Zambelli and Riccardo Bellazzi<\/td>\n<\/tr>\n
11.00-12.00<\/td>\nPoster session with coffee break service<\/td>\n<\/tr>\n
12.00-13.00<\/td>\nScientific Session 6<\/b><\/td>\n<\/tr>\n
 <\/td>\nComparison between heuristic and statistical analysis on protein structural properties<\/b> <\/a>
Eugenio Del Prete<\/u>, Serena Dotolo, Anna Marabotti and Angelo Facchiano<\/td>\n<\/tr>\n
Machine Learning approach to discriminate Saccharomyces cerevisiae yeast cells using sophisticated image features<\/b> <\/a>
Mohamed Tleis<\/u> and Fons Verbeek<\/td>\n<\/tr>\n
13.00-14.00<\/td>\nLunch break<\/td>\n<\/tr>\n
14.00-14.45<\/td>\nKeynote Lecture<\/b><\/td>\n<\/tr>\n
 <\/td>\nde.NBI \u2013 The German Network for Bioinformatics Infrastructure<\/b>
Alexander Goesmann<\/u>, Justus Liebig University Giessen, Germany<\/td>\n<\/tr>\n
14.45-15.15<\/td>\nScientific Session 7<\/b><\/td>\n<\/tr>\n
 <\/td>\nWISE: Workflow Instrumentation for Structure Extraction and Semantic Mapping<\/b>
Ruben Acuna and Zoe Lacroix<\/u><\/td>\n<\/tr>\n
15.15-15.45<\/td>\nSpecial guest lecture<\/b><\/td>\n<\/tr>\n
 <\/td>\nElixir-ITA: the state of the art<\/b>
Graziano Pesole<\/u>, University of Bari and CNR\/IBBE, Bari, Italy<\/td>\n<\/tr>\n
15.45-16.30<\/td>\nCoffee break<\/td>\n<\/tr>\n
16.30-18.15<\/td>\nDay closure and start of Guided Tour of Bari<\/b><\/td>\n<\/tr>\n
20.00-23.00<\/td>\nSocial Dinner<\/td>\n<\/tr>\n<\/table>\n\n\n\n\n\n\n\n\n\n\n\n
Friday October 16, 2015<\/font>
Workshop day 3 @ Hotel Palace, Via Francesco Lombardi 13, Bari<\/font><\/td>\n<\/tr>\n
09.15-10.00<\/td>\nKeynote Lecture<\/b><\/td>\n<\/tr>\n
 <\/td>\nCharacterising miRNA promoters and miRNA targets<\/b>
Artemis Hatzigeorgiou<\/u>, DIANA-Lab, Hellenic Pasteur Institute \/ Department of Computer & Communication Engineering, University of Thessaly, Greece<\/td>\n<\/tr>\n
10.00-11.00<\/td>\nScientific Session 8<\/b><\/td>\n<\/tr>\n
 <\/td>\nIn silico prediction of lncRNA function<\/b> <\/a>
Umberto Perron<\/u>, Paolo Provero and Ivan Molineris<\/td>\n<\/tr>\n
Identification of functional interaction between Transcription Factors and their targets: a computational approach focused on lncRNA<\/b> <\/a>
Marika Catapano<\/u>, Elena Grassi, Ivan Molineris and Paolo Provero<\/td>\n<\/tr>\n
11.00-12.00<\/td>\nPoster session with coffee break service<\/td>\n<\/tr>\n
12.00-12.45<\/td>\nKeynote Lecture<\/b><\/td>\n<\/tr>\n
 <\/td>\nImplementation of the European life-science infrastructure for biological information<\/b>
Rafael Jimenez<\/u>, ELIXIR Chief Technical Officer \u2013 ELIXIR, Hinxton, Cambridge, United Kingdom<\/td>\n<\/tr>\n
12.45-13.00<\/td>\nAnnounces, closure and farewell<\/b>
Announcement of Integrative Bioinformatics 2016<\/u> <\/a>
Ralf Hofestädt, University of Bielefeld
Announcement of NETTAB 2016<\/u>
Allegra Via, ELIXIR-ITA<\/td>\n<\/tr>\n<\/table>\n<\/div>\n","protected":false},"excerpt":{"rendered":"

Slides are being collected and will be linked from here, previous agreement by the presenters, in PDF. See the icon. Wednesday October 14, 2015Workshop day 1 @ Hotel Palace, Via Francesco Lombardi 13, Bari 08.30-09.00 Registration and poster hang-up 09.00-09.15 Welcome and Introduction 09.15-10.00 Opening Lecture   Adventures in Cereal Genomics Paul Kersey, European Bioinformatics […]<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":7,"menu_order":0,"comment_status":"closed","ping_status":"open","template":"","meta":{"footnotes":""},"class_list":["post-575","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"http:\/\/www.igst.it\/nettab\/2015\/wp-json\/wp\/v2\/pages\/575","targetHints":{"allow":["GET"]}}],"collection":[{"href":"http:\/\/www.igst.it\/nettab\/2015\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"http:\/\/www.igst.it\/nettab\/2015\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"http:\/\/www.igst.it\/nettab\/2015\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"http:\/\/www.igst.it\/nettab\/2015\/wp-json\/wp\/v2\/comments?post=575"}],"version-history":[{"count":63,"href":"http:\/\/www.igst.it\/nettab\/2015\/wp-json\/wp\/v2\/pages\/575\/revisions"}],"predecessor-version":[{"id":1824,"href":"http:\/\/www.igst.it\/nettab\/2015\/wp-json\/wp\/v2\/pages\/575\/revisions\/1824"}],"up":[{"embeddable":true,"href":"http:\/\/www.igst.it\/nettab\/2015\/wp-json\/wp\/v2\/pages\/7"}],"wp:attachment":[{"href":"http:\/\/www.igst.it\/nettab\/2015\/wp-json\/wp\/v2\/media?parent=575"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}