{"id":575,"date":"2014-09-26T14:15:40","date_gmt":"2014-09-26T14:15:40","guid":{"rendered":"http:\/\/www.igst.it\/nettab\/2014\/?page_id=575"},"modified":"2014-10-14T20:19:54","modified_gmt":"2014-10-14T20:19:54","slug":"scientific-programme","status":"publish","type":"page","link":"http:\/\/www.igst.it\/nettab\/2014\/programme\/scientific-programme\/","title":{"rendered":"Detailed programme"},"content":{"rendered":"
Print This Page<\/font><\/a><\/b><\/div>\n

This programme is still subject to changes.<\/p>\n\n\n\n\n\n
 Wednesday October 15, 2014<\/b><\/font>
\n Tutorial day @ Department of Computer Science, Via Pessinetto 12, Torino<\/font><\/td>\n<\/tr>\n
 14.30-16.15 <\/td>\n Protein Engineering and Drug Design Based on 3D Protein Models,
\n Gianfranco Gilardi, University of Torino, Italy<\/td>\n		 Next generation data analysis
\n using OneChannelGUI,
\n Raffaele Calogero and Francesca Cordero, University of Torino, Italy<\/td>\n<\/tr>\n
 16.15-16.45 <\/td>\n Coffee Break<\/td>\n<\/tr>\n
 16.45-18.30 <\/td>\n Protein Engineering and Drug Design Based on 3D Protein Models (cont’d),
\n Gianfranco Gilardi, University of Torino, Italy<\/td>\n		 Next generation data analysis
\n using OneChannelGUI (cont’d),
\n Raffaele Calogero and Francesca Cordero, University of Torino, Italy<\/td>\n<\/tr>\n<\/table>\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n
 Thursday October 16, 2014<\/b><\/font>
\n Workshop day 1 @ Molecular Biotechnology Center, Via Nizza 52, Torino<\/font><\/td>\n<\/tr>\n
 08.00-11.00 <\/td>\n Registration and poster hang-up<\/td>\n<\/tr>\n
 09.00-09.15 <\/td>\n Welcome and Introduction<\/td>\n<\/tr>\n
 09.15-10.00 <\/td>\n Keynote Lecture<\/b>
\n Title to be confirmed
\n Raffaele Calogero, University of Torino, Italy<\/b><\/td>\n<\/tr>\n
 10.00-10.30 <\/td>\n Scientific Session 1<\/p>\n
    \n
  • The mirror images in protein structure reconstruction and their energy terms,
    \nMonika Kurczynska<\/u>, Bogumil Konopka and Malgorzata Kotulska<\/li>\n
  • Effect of mutations to HIV-1 PR. Insights into drug resistance and drug design: a molecular dynamics approach,
    \nHaralambos Tzoupis<\/u><\/li>\n<\/ul>\n<\/td>\n<\/tr>\n
 10.30-11.00 <\/td>\n Coffee Break<\/td>\n<\/tr>\n
 11.00-12.30 <\/td>\n Scientific Session 2 <\/p>\n
    \n
  • GELA: Gene Expression Logic Analyzer,
    \nEmanuel Weitschek<\/u>, Giulia Fiscon, Giovanni Felici and Paola Bertolazzi<\/li>\n
  • From the inference of molecular structures to the analysis of emergent cellular dynamics: accelerating the computational study of biological systems with GPUs,
    \nDaniela Besozzi<\/u>, Marco S. Nobile, Paolo Cazzaniga, Davide Cipolla and Giancarlo Mauri<\/li>\n
  • Flash Poster presentations\n
      \n
    • Evolutionary model for trascriptional regulatory networks,
      \nAntonio Rosanova<\/u> and Michele Caselle<\/li>\n
    • Quantitative analysis of microtubule comets: differences between boundary and inside comets velocity from confocal time series images,
      \nIvan A. Sciascia<\/u>, Ferdinando Di Cunto, Alejandro Giorgetti and Marta Gai<\/li>\n
    • Biomolecular annotation data integration and identification of missing and new data.
      \nArif Canakoglu<\/u> and Marco Masseroli<\/li>\n<\/ul>\n
    • Special Guest talk<\/b>
      \nUnderstanding protein\u2013protein contacts on a PDB-wide scale,
      \nGuido Capitani, Paul Scherrer Institute, Villigen, Switzerland<\/li>\n<\/ul>\n<\/td>\n<\/tr>\n
 12.30-13.30 <\/td>\n Lunch Break<\/td>\n<\/tr>\n
 13.30-14.20 <\/td>\n Scientific Session 3<\/p>\n
    \n
  • Special Guest talk<\/b>
    \nFrom genes to networks and to dynamic models
    \nLilia Alberghina, SYSBIO Centre of Systems Biology, University Milano-Bicocca, Italy<\/li>\n
  • Trends in structural coverage of the protein universe
    \nKamil Khafizov<\/u>, Carlos Madrid-Aliste, Almo Steven and Andras Fiser<\/li>\n
  • Flash Poster presentations\n
      \n
    • Electronic Properties of Modified Biological Molecules,
      \nManoel Vasconcelos<\/u> and Eudenilson Albuquerque<\/li>\n
    • Speed of evolution in large asexual populations with diminishing returns,
      \nMaria Rita Fumagalli<\/u>, Matteo Osella, Philippe Thomen, Francois Heslot and Marco Cosentino Lagomarsino<\/li>\n
    • Searching for the protein targets of 4-nonylphenol using a computational approach
      \nDeborah Giordano, Bernardina Scafuri, Ivana Caputo, Flaminia Gay, Anna Capaldo, Carla Esposito and Anna Marabotti<\/u><\/li>\n<\/ul>\n<\/td>\n<\/tr>\n
 14.20-15.00 <\/td>\n Keynote lecture<\/b>
\n Biomodel engineering with Petri nets,
\n Wolfgang Marwan,Otto-von-Guericke Universit\u00e4t, Magdeburg, Germany<\/b><\/td>\n<\/tr>\n
 15.00-15.30 <\/td>\n Coffee Break<\/td>\n<\/tr>\n
 15.30-16.30 <\/td>\n Poster Session (see the list of posters<\/a>)<\/td>\n<\/tr>\n
 16.30-18.00 <\/td>\n Scientific Session 4<\/p>\n
    \n
  • Integrative strategies for omics data: ERalpha cistrome and epigenome case-study,
    \nGiulio Ferrero<\/u>, Valentina Miano, Gianfranco Balbo, Michele De Bortoli, Marco Beccuti and Francesca Cordero<\/li>\n
  • Analysis of capture-based bisulfite sequencing data with ERNE-BS5
    \nNicola Prezza<\/u>, Francesco Vezzi, Max Kaller and Alberto Policriti<\/li>\n
  • Topological SHAPE analysis of RNA structure by persistent homology
    \nAdane Mamuye<\/u>, Emanuela Merelli and Matteo Rucco<\/li>\n
  • The miRNA Action Mechanism Defines Dynamics and Noise Buffering in Feed Forward Loops
    \nAlexander Samsonov<\/u>, Maria Duk and Maria Samsonova<\/li>\n<\/ul>\n<\/td>\n<\/tr>\n
 20.00-23.00 <\/td>\n Social Dinner<\/td>\n<\/tr>\n<\/table>\n\n\n\n\n\n\n\n\n\n\n
Friday October 17, 2014<\/b><\/font>
\nWorkshop day 2 @ Molecular Biotechnology Center, Via Nizza 52, Torino<\/font><\/td>\n<\/tr>\n
 08.30-11.00 <\/td>\n Registration<\/td>\n<\/tr>\n
 09.00-09.45 <\/td>\n Keynote lecture<\/b> (joint with Crystal (cl)Year)
\n Modeling protein structures and complexes using evolutionary information,
\n Torsten Schwede, University of Basel, Switzerland<\/b><\/td>\n<\/tr>\n
 09.45-10.35 <\/td>\n Scientific Session 5<\/p>\n
    \n
  • Sequence based model of gap gene regulatory network,
    \nMaria Samsonova<\/u>, Konstantin Kozlov, Vitaly Gursky and Ivan Kulakovsky<\/li>\n
  • Role of Transposable Elements in fine-tuning alternative splicing,
    \nAlessandro Testori<\/u> and Michele Caselle<\/li>\n<\/ul>\n<\/td>\n<\/tr>\n
 10.35-11.00 <\/td>\n Coffee Break<\/td>\n<\/tr>\n
 11.00-12.45 <\/td>\n Scientific Session 6<\/p>\n
    \n
  • A combination of transcriptional and microRNA regulation improves the stability of the relative concentrations of target genes,
    \nAndrea Riba<\/u><\/li>\n
  • Discovering the Escherichia coli nutritional phase space from a compendium of environmental conditions,
    \nClaudio Angione<\/u> and Pietro Liò<\/li>\n
  • First passage time problems in gene expression,
    \nAlma Dal Co<\/u><\/li>\n
  • From genome to molecular networks, a plug-in to map next generation sequencing data to protein interactions and their structures with the Integrated Genome Browser,
    \nArnaud Ceol<\/u> and Heiko Muller<\/li>\n
  • Special Guest talk<\/b>
    \nELIXIR technical coordinators: who we are and what we are trying to do
    \nFederico Zambelli, University of Milan & IBBE National Research Council, Italy<\/li>\n<\/ul>\n<\/td>\n<\/tr>\n
 12.45-14.00 <\/td>\n Lunch Break<\/td>\n<\/tr>\n
 14.00-14.45 <\/td>\n Keynote lecture<\/b> (joint with Crystal (cl)Year)
\n Crystallizing macromolecular complexes: the ribosome
\n Ada Yonath, Weizmann Institute of Science, Rehovot, Israel<\/b><\/td>\n<\/tr>\n
 14.45-15.00 <\/td>\n Closing session<\/p>\n
    \n
  • Assignment of Best Poster Award<\/li>\n
  • Announcement of NETTAB 2015<\/li>\n
  • Farewell<\/li>\n<\/ul>\n<\/td>\n<\/tr>\n<\/table>\n","protected":false},"excerpt":{"rendered":"

    Print This Page This programme is still subject to changes.  Wednesday October 15, 2014  Tutorial day @ Department of Computer Science, Via Pessinetto 12, Torino  14.30-16.15   Protein Engineering and Drug Design Based on 3D Protein Models,  Gianfranco Gilardi, University of Torino, Italy  Next generation data analysis  using OneChannelGUI,  Raffaele Calogero and Francesca Cordero, University of […]<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":7,"menu_order":0,"comment_status":"closed","ping_status":"open","template":"","meta":{"footnotes":""},"class_list":["post-575","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"http:\/\/www.igst.it\/nettab\/2014\/wp-json\/wp\/v2\/pages\/575","targetHints":{"allow":["GET"]}}],"collection":[{"href":"http:\/\/www.igst.it\/nettab\/2014\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"http:\/\/www.igst.it\/nettab\/2014\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"http:\/\/www.igst.it\/nettab\/2014\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"http:\/\/www.igst.it\/nettab\/2014\/wp-json\/wp\/v2\/comments?post=575"}],"version-history":[{"count":38,"href":"http:\/\/www.igst.it\/nettab\/2014\/wp-json\/wp\/v2\/pages\/575\/revisions"}],"predecessor-version":[{"id":690,"href":"http:\/\/www.igst.it\/nettab\/2014\/wp-json\/wp\/v2\/pages\/575\/revisions\/690"}],"up":[{"embeddable":true,"href":"http:\/\/www.igst.it\/nettab\/2014\/wp-json\/wp\/v2\/pages\/7"}],"wp:attachment":[{"href":"http:\/\/www.igst.it\/nettab\/2014\/wp-json\/wp\/v2\/media?parent=575"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}