This programme is still subject to changes.
Wednesday October 15, 2014
Tutorial day @ Department of Computer Science, Via Pessinetto 12, Torino |
| 14.30-16.15 |
Protein Engineering and Drug Design Based on 3D Protein Models,
Gianfranco Gilardi, University of Torino, Italy |
Next generation data analysis
using OneChannelGUI,
Raffaele Calogero and Francesca Cordero, University of Torino, Italy |
| 16.15-16.45 |
Coffee Break |
| 16.45-18.30 |
Protein Engineering and Drug Design Based on 3D Protein Models (cont’d),
Gianfranco Gilardi, University of Torino, Italy |
Next generation data analysis
using OneChannelGUI (cont’d),
Raffaele Calogero and Francesca Cordero, University of Torino, Italy |
Thursday October 16, 2014
Workshop day 1 @ Molecular Biotechnology Center, Via Nizza 52, Torino |
| 08.00-11.00 |
Registration and poster hang-up |
| 09.00-09.15 |
Welcome and Introduction |
| 09.15-10.00 |
Keynote Lecture
Title to be confirmed
Raffaele Calogero, University of Torino, Italy |
| 10.00-10.30 |
Scientific Session 1
- The mirror images in protein structure reconstruction and their energy terms,
Monika Kurczynska, Bogumil Konopka and Malgorzata Kotulska
- Effect of mutations to HIV-1 PR. Insights into drug resistance and drug design: a molecular dynamics approach,
Haralambos Tzoupis
|
| 10.30-11.00 |
Coffee Break |
| 11.00-12.30 |
Scientific Session 2
- GELA: Gene Expression Logic Analyzer,
Emanuel Weitschek, Giulia Fiscon, Giovanni Felici and Paola Bertolazzi
- From the inference of molecular structures to the analysis of emergent cellular dynamics: accelerating the computational study of biological systems with GPUs,
Daniela Besozzi, Marco S. Nobile, Paolo Cazzaniga, Davide Cipolla and Giancarlo Mauri
- Flash Poster presentations
- Evolutionary model for trascriptional regulatory networks,
Antonio Rosanova and Michele Caselle
- Quantitative analysis of microtubule comets: differences between boundary and inside comets velocity from confocal time series images,
Ivan A. Sciascia, Ferdinando Di Cunto, Alejandro Giorgetti and Marta Gai
- Biomolecular annotation data integration and identification of missing and new data.
Arif Canakoglu and Marco Masseroli
- Special Guest talk
Understanding protein–protein contacts on a PDB-wide scale,
Guido Capitani, Paul Scherrer Institute, Villigen, Switzerland
|
| 12.30-13.30 |
Lunch Break |
| 13.30-14.20 |
Scientific Session 3
- Special Guest talk
From genes to networks and to dynamic models
Lilia Alberghina, SYSBIO Centre of Systems Biology, University Milano-Bicocca, Italy
- Trends in structural coverage of the protein universe
Kamil Khafizov, Carlos Madrid-Aliste, Almo Steven and Andras Fiser
- Flash Poster presentations
- Electronic Properties of Modified Biological Molecules,
Manoel Vasconcelos and Eudenilson Albuquerque
- Speed of evolution in large asexual populations with diminishing returns,
Maria Rita Fumagalli, Matteo Osella, Philippe Thomen, Francois Heslot and Marco Cosentino Lagomarsino
- Searching for the protein targets of 4-nonylphenol using a computational approach
Deborah Giordano, Bernardina Scafuri, Ivana Caputo, Flaminia Gay, Anna Capaldo, Carla Esposito and Anna Marabotti
|
| 14.20-15.00 |
Keynote lecture
Biomodel engineering with Petri nets,
Wolfgang Marwan,Otto-von-Guericke Universität, Magdeburg, Germany |
| 15.00-15.30 |
Coffee Break |
| 15.30-16.30 |
Poster Session (see the list of posters) |
| 16.30-18.00 |
Scientific Session 4
- Integrative strategies for omics data: ERalpha cistrome and epigenome case-study,
Giulio Ferrero, Valentina Miano, Gianfranco Balbo, Michele De Bortoli, Marco Beccuti and Francesca Cordero
- Analysis of capture-based bisulfite sequencing data with ERNE-BS5
Nicola Prezza, Francesco Vezzi, Max Kaller and Alberto Policriti
- Topological SHAPE analysis of RNA structure by persistent homology
Adane Mamuye, Emanuela Merelli and Matteo Rucco
- The miRNA Action Mechanism Defines Dynamics and Noise Buffering in Feed Forward Loops
Alexander Samsonov, Maria Duk and Maria Samsonova
|
| 20.00-23.00 |
Social Dinner |
Friday October 17, 2014
Workshop day 2 @ Molecular Biotechnology Center, Via Nizza 52, Torino |
| 08.30-11.00 |
Registration |
| 09.00-09.45 |
Keynote lecture (joint with Crystal (cl)Year)
Modeling protein structures and complexes using evolutionary information,
Torsten Schwede, University of Basel, Switzerland |
| 09.45-10.35 |
Scientific Session 5
- Sequence based model of gap gene regulatory network,
Maria Samsonova, Konstantin Kozlov, Vitaly Gursky and Ivan Kulakovsky
- Role of Transposable Elements in fine-tuning alternative splicing,
Alessandro Testori and Michele Caselle
|
| 10.35-11.00 |
Coffee Break |
| 11.00-12.45 |
Scientific Session 6
- A combination of transcriptional and microRNA regulation improves the stability of the relative concentrations of target genes,
Andrea Riba
- Discovering the Escherichia coli nutritional phase space from a compendium of environmental conditions,
Claudio Angione and Pietro Liò
- First passage time problems in gene expression,
Alma Dal Co
- From genome to molecular networks, a plug-in to map next generation sequencing data to protein interactions and their structures with the Integrated Genome Browser,
Arnaud Ceol and Heiko Muller
- Special Guest talk
ELIXIR technical coordinators: who we are and what we are trying to do
Federico Zambelli, University of Milan & IBBE National Research Council, Italy
|
| 12.45-14.00 |
Lunch Break |
| 14.00-14.45 |
Keynote lecture (joint with Crystal (cl)Year)
Crystallizing macromolecular complexes: the ribosome
Ada Yonath, Weizmann Institute of Science, Rehovot, Israel |
| 14.45-15.00 |
Closing session
- Assignment of Best Poster Award
- Announcement of NETTAB 2015
- Farewell
|
